CxSystem2
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B
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C
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D
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E
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F
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__init__() (cxsystem2.bui.bui.RunServer method)
(cxsystem2.configuration.config_file_converter.ConfigConverter method)
(cxsystem2.core.cxsystem.CxSystem method)
(cxsystem2.core.equation_templates.EquationHelper method)
(cxsystem2.core.parameter_parser.NeuronParser method)
(cxsystem2.core.parameter_parser.SynapseParser method)
(cxsystem2.core.physiology_reference.NeuronReference method)
(cxsystem2.core.physiology_reference.SynapseReference method)
(cxsystem2.core.stimuli.Stimuli method)
(cxsystem2.core.workspace_manager.Workspace method)
(cxsystem2.neurodynlib.multicompartment_models.LeakyCompartment method)
(cxsystem2.neurodynlib.multicompartment_models.LegacyPyramidalCell method)
(cxsystem2.neurodynlib.multicompartment_models.MulticompartmentNeuron method)
(cxsystem2.neurodynlib.neuron_models.AdexNeuron method)
(cxsystem2.neurodynlib.neuron_models.EifNeuron method)
(cxsystem2.neurodynlib.neuron_models.HodgkinHuxleyNeuron method)
(cxsystem2.neurodynlib.neuron_models.IzhikevichNeuron method)
(cxsystem2.neurodynlib.neuron_models.LifAscNeuron method)
(cxsystem2.neurodynlib.neuron_models.LifNeuron method)
(cxsystem2.neurodynlib.neuron_models.PointNeuron method)
(cxsystem2.neurodynlib.neuron_models.neuron_factory method)
(cxsystem2.neurodynlib.receptor_models.ReceptorModel method)
(cxsystem2.neurodynlib.tools.spike_tools.PopulationSpikeStats method)
(cxsystem2.visualization.rasterplot_to_pdf.rasterplot_pdf_generator method)
(cxsystem2.visualization.spikedata_to_csvs.SpikeData method)
_get_spike_train_power_spectrum() (in module cxsystem2.neurodynlib.tools.spike_tools)
_spike_train_2_binary_vector() (in module cxsystem2.neurodynlib.tools.spike_tools)
A
add_external_current() (cxsystem2.neurodynlib.neuron_models.PointNeuron method)
add_model_definition() (cxsystem2.neurodynlib.neuron_models.PointNeuron method)
add_tonic_current() (cxsystem2.neurodynlib.neuron_models.PointNeuron method)
add_vm_noise() (cxsystem2.neurodynlib.neuron_models.PointNeuron method)
AdexNeuron (class in cxsystem2.neurodynlib.neuron_models)
all_ISI (cxsystem2.neurodynlib.tools.spike_tools.PopulationSpikeStats attribute)
B
BC() (cxsystem2.core.physiology_reference.NeuronReference method)
C
calculate_input_seqs() (cxsystem2.core.stimuli.Stimuli method)
change_anat_file_header_value() (in module cxsystem2.core.tools)
CI() (cxsystem2.core.physiology_reference.NeuronReference method)
ConfigConverter (class in cxsystem2.configuration.config_file_converter)
CPlastic() (cxsystem2.core.parameter_parser.SynapseParser method)
(cxsystem2.core.physiology_reference.SynapseReference method)
create_connections_key() (cxsystem2.core.workspace_manager.Workspace method)
create_results_key() (cxsystem2.core.workspace_manager.Workspace method)
CV (cxsystem2.neurodynlib.tools.spike_tools.PopulationSpikeStats attribute)
CxSystem (class in cxsystem2.core.cxsystem)
cxsystem2.bui.bui (module)
cxsystem2.configuration.config_file_converter (module)
cxsystem2.core.cxsystem (module)
cxsystem2.core.equation_templates (module)
cxsystem2.core.parameter_parser (module)
cxsystem2.core.physiology_reference (module)
cxsystem2.core.stimuli (module)
cxsystem2.core.tools (module)
cxsystem2.core.workspace_manager (module)
cxsystem2.neurodynlib.multicompartment_models (module)
cxsystem2.neurodynlib.neuron_models (module)
cxsystem2.neurodynlib.receptor_models (module)
cxsystem2.neurodynlib.tools.input_factory (module)
cxsystem2.neurodynlib.tools.plot_tools (module)
cxsystem2.neurodynlib.tools.spike_tools (module)
cxsystem2.visualization.rasterplot_to_pdf (module)
cxsystem2.visualization.spikedata_to_csvs (module)
D
Depressing() (cxsystem2.core.parameter_parser.SynapseParser method)
(cxsystem2.core.physiology_reference.SynapseReference method)
E
EifNeuron (class in cxsystem2.neurodynlib.neuron_models)
EquationHelper (class in cxsystem2.core.equation_templates)
F
Facilitating() (cxsystem2.core.parameter_parser.SynapseParser method)
(cxsystem2.core.physiology_reference.SynapseReference method)
filter_spike_trains() (in module cxsystem2.neurodynlib.tools.spike_tools)
filtered_spike_trains (cxsystem2.neurodynlib.tools.spike_tools.PopulationSpikeStats attribute)
Fixed() (cxsystem2.core.parameter_parser.SynapseParser method)
(cxsystem2.core.physiology_reference.SynapseReference method)
Fixed_calcium() (cxsystem2.core.parameter_parser.SynapseParser method)
(cxsystem2.core.physiology_reference.SynapseReference method)
Fixed_const_wght() (cxsystem2.core.parameter_parser.SynapseParser method)
(cxsystem2.core.physiology_reference.SynapseReference method)
Fixed_multiply() (cxsystem2.core.parameter_parser.SynapseParser method)
(cxsystem2.core.physiology_reference.SynapseReference method)
G
gather_result() (cxsystem2.core.cxsystem.CxSystem method)
generate_inputs() (cxsystem2.core.stimuli.Stimuli method)
get_averaged_single_neuron_power_spectrum() (in module cxsystem2.neurodynlib.tools.spike_tools)
get_compartment_equations() (cxsystem2.neurodynlib.neuron_models.PointNeuron method)
get_initial_values() (cxsystem2.neurodynlib.neuron_models.PointNeuron method)
get_input_positions() (cxsystem2.core.stimuli.Stimuli method)
get_json() (cxsystem2.neurodynlib.neuron_models.PointNeuron method)
get_membrane_equation() (cxsystem2.neurodynlib.neuron_models.PointNeuron method)
get_neuron_equations() (cxsystem2.neurodynlib.neuron_models.PointNeuron method)
get_neuron_parameters() (cxsystem2.neurodynlib.neuron_models.PointNeuron method)
get_parameter_names() (cxsystem2.neurodynlib.neuron_models.PointNeuron method)
get_population_activity_power_spectrum() (in module cxsystem2.neurodynlib.tools.spike_tools)
get_positions_list() (cxsystem2.visualization.spikedata_to_csvs.SpikeData method)
get_ramp_current() (in module cxsystem2.neurodynlib.tools.input_factory)
get_refractory_period() (cxsystem2.neurodynlib.neuron_models.PointNeuron method)
get_reset_statements() (cxsystem2.neurodynlib.neuron_models.PointNeuron method)
get_sinusoidal_current() (in module cxsystem2.neurodynlib.tools.input_factory)
get_spike_data() (cxsystem2.visualization.spikedata_to_csvs.SpikeData method)
get_spike_list() (cxsystem2.visualization.spikedata_to_csvs.SpikeData method)
get_spike_stats() (in module cxsystem2.neurodynlib.tools.spike_tools)
get_spike_time() (in module cxsystem2.neurodynlib.tools.spike_tools)
get_spike_train_stats() (in module cxsystem2.neurodynlib.tools.spike_tools)
get_spikes_current() (in module cxsystem2.neurodynlib.tools.input_factory)
get_states_to_monitor() (cxsystem2.neurodynlib.neuron_models.PointNeuron method)
get_step_current() (in module cxsystem2.neurodynlib.tools.input_factory)
get_threshold_condition() (cxsystem2.neurodynlib.neuron_models.PointNeuron method)
get_zero_current() (in module cxsystem2.neurodynlib.tools.input_factory)
getting_started() (cxsystem2.neurodynlib.neuron_models.AdexNeuron method)
(cxsystem2.neurodynlib.neuron_models.EifNeuron method)
(cxsystem2.neurodynlib.neuron_models.HodgkinHuxleyNeuron method)
(cxsystem2.neurodynlib.neuron_models.PointNeuron method)
(in module cxsystem2.neurodynlib.tools.input_factory)
H
HodgkinHuxleyNeuron (class in cxsystem2.neurodynlib.neuron_models)
I
IzhikevichNeuron (class in cxsystem2.neurodynlib.neuron_models)
L
L1i() (cxsystem2.core.physiology_reference.NeuronReference method)
LeakyCompartment (class in cxsystem2.neurodynlib.multicompartment_models)
LegacyPyramidalCell (class in cxsystem2.neurodynlib.multicompartment_models)
LifAscNeuron (class in cxsystem2.neurodynlib.neuron_models)
LifNeuron (class in cxsystem2.neurodynlib.neuron_models)
list_neurons_in_json() (cxsystem2.neurodynlib.neuron_models.PointNeuron method)
load_from_file() (in module cxsystem2.core.tools)
load_input_seq() (cxsystem2.core.stimuli.Stimuli method)
M
make_neuron_group() (cxsystem2.neurodynlib.neuron_models.PointNeuron method)
MC() (cxsystem2.core.physiology_reference.NeuronReference method)
mean_isi (cxsystem2.neurodynlib.tools.spike_tools.PopulationSpikeStats attribute)
monitors() (cxsystem2.core.cxsystem.CxSystem method)
MulticompartmentNeuron (class in cxsystem2.neurodynlib.multicompartment_models)
N
NDNEURON() (cxsystem2.core.physiology_reference.NeuronReference method)
neuron_factory (class in cxsystem2.neurodynlib.neuron_models)
neuron_group() (cxsystem2.core.cxsystem.CxSystem method)
NeuronParser (class in cxsystem2.core.parameter_parser)
NeuronReference (class in cxsystem2.core.physiology_reference)
nr_neurons (cxsystem2.neurodynlib.tools.spike_tools.PopulationSpikeStats attribute)
nr_spikes (cxsystem2.neurodynlib.tools.spike_tools.PopulationSpikeStats attribute)
P
parameter_finder() (in module cxsystem2.core.tools)
PC() (cxsystem2.core.physiology_reference.NeuronReference method)
plot_fi_curve() (cxsystem2.neurodynlib.neuron_models.PointNeuron method)
plot_ISI_distribution() (in module cxsystem2.neurodynlib.tools.plot_tools)
plot_network_activity() (in module cxsystem2.neurodynlib.tools.plot_tools)
plot_population_activity_power_spectrum() (in module cxsystem2.neurodynlib.tools.plot_tools)
plot_ramp_current_example() (in module cxsystem2.neurodynlib.tools.input_factory)
plot_sinusoidal_current_example() (in module cxsystem2.neurodynlib.tools.input_factory)
plot_spike_train_power_spectrum() (in module cxsystem2.neurodynlib.tools.plot_tools)
plot_states() (cxsystem2.neurodynlib.neuron_models.AdexNeuron method)
(cxsystem2.neurodynlib.neuron_models.HodgkinHuxleyNeuron method)
(cxsystem2.neurodynlib.neuron_models.IzhikevichNeuron method)
(cxsystem2.neurodynlib.neuron_models.PointNeuron method)
plot_step_current_example() (in module cxsystem2.neurodynlib.tools.input_factory)
plot_vm() (cxsystem2.neurodynlib.neuron_models.PointNeuron method)
plot_voltage_and_current_traces() (in module cxsystem2.neurodynlib.tools.plot_tools)
PointNeuron (class in cxsystem2.neurodynlib.neuron_models)
PopulationSpikeStats (class in cxsystem2.neurodynlib.tools.spike_tools)
pretty_print_spike_train_stats() (in module cxsystem2.neurodynlib.tools.spike_tools)
R
rasterplot_pdf_generator (class in cxsystem2.visualization.rasterplot_to_pdf)
read_abi_neuron_config() (cxsystem2.neurodynlib.neuron_models.LifAscNeuron method)
read_config_file() (in module cxsystem2.core.tools)
read_json() (cxsystem2.neurodynlib.neuron_models.PointNeuron method)
ReceptorModel (class in cxsystem2.neurodynlib.receptor_models)
relay() (cxsystem2.core.cxsystem.CxSystem method)
RunServer (class in cxsystem2.bui.bui)
S
save_json() (cxsystem2.neurodynlib.neuron_models.PointNeuron method)
scale_by_calcium() (cxsystem2.core.parameter_parser.SynapseParser method)
set_excitatory_receptors() (cxsystem2.neurodynlib.neuron_models.PointNeuron method)
set_inhibitory_receptors() (cxsystem2.neurodynlib.neuron_models.PointNeuron method)
set_model_definition() (cxsystem2.neurodynlib.neuron_models.PointNeuron method)
set_neuron_parameters() (cxsystem2.neurodynlib.neuron_models.PointNeuron method)
simulate_neuron() (cxsystem2.neurodynlib.neuron_models.PointNeuron method)
SpikeData (class in cxsystem2.visualization.spikedata_to_csvs)
SS() (cxsystem2.core.physiology_reference.NeuronReference method)
std_isi (cxsystem2.neurodynlib.tools.spike_tools.PopulationSpikeStats attribute)
STDP() (cxsystem2.core.parameter_parser.SynapseParser method)
(cxsystem2.core.physiology_reference.SynapseReference method)
STDP_with_scaling() (cxsystem2.core.parameter_parser.SynapseParser method)
(cxsystem2.core.physiology_reference.SynapseReference method)
Stimuli (class in cxsystem2.core.stimuli)
synapse() (cxsystem2.core.cxsystem.CxSystem method)
SynapseParser (class in cxsystem2.core.parameter_parser)
SynapseReference (class in cxsystem2.core.physiology_reference)
V
VPM() (cxsystem2.core.physiology_reference.NeuronReference method)
W
what_is_this() (cxsystem2.neurodynlib.neuron_models.PointNeuron method)
Workspace (class in cxsystem2.core.workspace_manager)
write_to_file() (in module cxsystem2.core.tools)
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